Fluffy Japanese Cotton Cheesecake Cupcakes

It was a quiet Sunday morning, the kind where the sunlight pours in just right and you’re in the mood to bake something light and delightful. I wanted something sweet, but not heavy. Something elegant, yet simple. And that’s when I remembered these Fluffy Japanese Cotton Cheesecake Cupcakes—a soft, airy treat that’s like biting into a cloud.

I had tried the full-size version before, but this time I wanted to make them as individual cupcakes—perfect for sharing, or maybe not sharing at all. There’s something magical about watching them rise ever so gently in the oven, golden and jiggly, like tiny pillows of joy.

Short Description


These Fluffy Japanese Cotton Cheesecake Cupcakes are light, airy, and melt-in-your-mouth soft. With a hint of sweetness and a delicate cream cheese flavor, they’re the perfect balance between a cheesecake and a soufflé, all in a charming cupcake form.

Key Ingredients

  • 4 oz (113g) cream cheese, softened
  • 1/4 cup (60ml) milk
  • 2 tablespoons unsalted butter
  • 2 tablespoons cake flour
  • 1 tablespoon cornstarch
  • 2 large eggs, separated
  • 1/4 cup (50g) granulated sugar
  • 1/2 teaspoon vanilla extract
  • 1/4 teaspoon cream of tartar (optional, for stabilizing egg whites)
  • Powdered sugar for dusting (optional)

Tools Needed

  • Electric mixer or stand mixer
  • Mixing bowls
  • Muffin tin with cupcake liners
  • Fine mesh sieve
  • Whisk and spatula
  • Water bath pan (larger baking tray for steam baking)

Cooking Instructions

Step 1: Preheat & Prep
Preheat your oven to 300°F (150°C). Line a muffin tin with paper liners and prepare a water bath by filling a larger baking dish with hot water—your cupcake tin will sit inside this to create steam in the oven.

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Step 2: Make the Cheesecake Base
In a small saucepan over low heat, combine the cream cheese, milk, and butter. Stir until smooth and fully melted. Let it cool slightly.

Step 3: Add Dry Ingredients
Sift the cake flour and cornstarch into the cream cheese mixture. Whisk until smooth and lump-free. Add in the egg yolks and vanilla extract, whisking gently until combined.

Step 4: Whip the Egg Whites
In a clean bowl, beat the egg whites until foamy. Add cream of tartar (if using), then gradually add the sugar, beating until stiff peaks form. The meringue should be glossy and hold its shape.

Step 5: Fold the Meringue
Gently fold one-third of the egg white mixture into the cream cheese batter to lighten it. Then carefully fold in the remaining meringue, being careful not to deflate the batter.

Step 6: Pour and Bake
Divide the batter evenly among the cupcake liners, filling each about 3/4 full. Place the muffin tin into the prepared water bath and bake for 25–30 minutes, or until the tops are set and slightly golden.

Step 7: Cool Gently
Turn off the oven and crack the door open. Let the cupcakes cool in the oven for 10–15 minutes to avoid sudden shrinkage. Remove from the oven and cool completely before dusting with powdered sugar if desired.

Why You’ll Love This Recipe

  • Feather-Light Texture – As soft as air, these cupcakes literally melt in your mouth.
  • Not Too Sweet – Perfect for those who like a lightly sweet dessert.
  • Elegant Presentation – Their golden tops and jiggly centers are simply irresistible.
  • Make-Ahead Friendly – They store beautifully and taste just as good chilled.
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Mistakes to Avoid & Solutions

  • Deflating Meringue – Gently fold the egg whites into the batter to keep the structure.
  • Too Hot, Too Fast – A low temperature and water bath are key to avoiding cracks.
  • Shrinking Tops – Letting them cool slowly in the oven helps them maintain their puff.

Serving Suggestions

  • Dust with powdered sugar or top with fresh berries.
  • Serve chilled or at room temperature with tea.
  • Add a dollop of whipped cream for an extra touch of indulgence.

Storage Tips

  • Store in the refrigerator in an airtight container for up to 3–4 days.
  • Best enjoyed chilled or slightly warmed in the microwave for a few seconds.

FAQs

Can I make this without a water bath?
Technically yes, but the water bath gives that signature smooth, creamy texture without cracks.

Can I use all-purpose flour instead of cake flour?
Yes, though cake flour gives a softer, more delicate crumb.

Why did my cupcakes deflate?
Sudden changes in temperature or overmixing the batter can cause shrinkage. Let them cool gently in the oven.

Can I flavor these cupcakes?
Absolutely! Try a splash of lemon juice, yuzu, or almond extract for a twist.

Final Thoughts


There’s something truly special about these Fluffy Japanese Cotton Cheesecake Cupcakes. They’re light, not too sweet, and carry just enough cream cheese flavor to make you want another. Whether you serve them at a brunch, a tea party, or as an everyday treat, they’re bound to bring a little extra softness and joy to your day.

Once you try them, you might find yourself whipping up a batch anytime you need a little sweetness—without the heaviness.

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